Package: TGS
Version: 1.0.1.9000
Title: Rapid Reconstruction of Time-Varying Gene Regulatory Networks
Description: Rapid advancements in high-throughput gene sequencing
        technologies have resulted in genome-scale time-series
        datasets. Uncovering the underlying temporal sequence of gene
        regulatory events in the form of time-varying gene regulatory
        networks demands accurate and computationally efficient
        algorithms. Such an algorithm is 'TGS'. It is proposed in
        Saptarshi Pyne, Alok Ranjan Kumar, and Ashish Anand; Rapid
        reconstruction of time-varying gene regulatory networks;
        IEEE/ACM Transactions on Computational Biology and
        Bioinformatics, 17(1):278{291, Jan-Feb 2020. The TGS algorithm
        is shown to consume only 29 minutes for a microarray dataset
        with 4028 genes. This package provides an implementation of the
        TGS algorithm and its variants.
Authors@R: c(
    person(given = "Saptarshi", family = "Pyne", email = "saptarshipyne01@gmail.com", role = c("aut", "cre"),
        comment = c(ORCID = "0000-0001-9710-6749")),
    person(given = "Manan", family = "Gupta", email = "guptamanan100@gmail.com", role = "aut"),
    person(given = "Alok", family = "Kumar", email = "alok4039@gmail.com", role = "aut"), 
    person(given = "Ashish", family = "Anand", email = "anand.ashish@iitg.ac.in", role = "aut", 
        comment = c(ORCID = "0000-0002-0024-3358")))
License: CC BY-NC-SA 4.0
Encoding: UTF-8
RoxygenNote: 7.1.0
biocViews: NetworkInference, GraphAndNetwork, Network, GeneExpression,
        Microarray, SystemsBiology, Software
URL: https://www.biorxiv.org/content/early/2018/06/14/272484,
        https://github.com/sap01/TGS
BugReports: https://github.com/sap01/TGS/issues
Imports: rjson, bnstruct, ggm, foreach, doParallel, minet (>= 3.38.0)
Suggests: R.rsp, testthat (>= 2.1.0), knitr, rmarkdown
VignetteBuilder: knitr
Config/pak/sysreqs: libglpk-dev libxml2-dev
Repository: https://sap01.r-universe.dev
Date/Publication: 2020-05-22 14:04:41 UTC
RemoteUrl: https://github.com/sap01/tgs
RemoteRef: HEAD
RemoteSha: c639074ec5d4e734ad00bbec1d713e60ae75b181
NeedsCompilation: no
Packaged: 2026-10-05 10:40:33 UTC; root
Author: Saptarshi Pyne [aut, cre] (ORCID:
    <https://orcid.org/0000-0001-9710-6749>),
  Manan Gupta [aut],
  Alok Kumar [aut],
  Ashish Anand [aut] (ORCID: <https://orcid.org/0000-0002-0024-3358>)
Maintainer: Saptarshi Pyne <saptarshipyne01@gmail.com>