{ "_id": "6a265f4f794753ddbc3e51bc", "Package": "TGS", "Version": "1.0.1.9000", "Title": "Rapid Reconstruction of Time-Varying Gene Regulatory Networks", "Description": "Rapid advancements in high-throughput gene sequencing\ntechnologies have resulted in genome-scale time-series\ndatasets. Uncovering the underlying temporal sequence of gene\nregulatory events in the form of time-varying gene regulatory\nnetworks demands accurate and computationally efficient\nalgorithms. Such an algorithm is 'TGS'. It is proposed in\nSaptarshi Pyne, Alok Ranjan Kumar, and Ashish Anand; Rapid\nreconstruction of time-varying gene regulatory networks;\nIEEE/ACM Transactions on Computational Biology and\nBioinformatics, 17(1):278{291, Jan-Feb 2020. The TGS algorithm\nis shown to consume only 29 minutes for a microarray dataset\nwith 4028 genes. This package provides an implementation of the\nTGS algorithm and its variants.", "Authors@R": "c(\nperson(given = \"Saptarshi\", family = \"Pyne\", email = \"saptarshipyne01@gmail.com\", role = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0001-9710-6749\")),\nperson(given = \"Manan\", family = \"Gupta\", email = \"guptamanan100@gmail.com\", role = \"aut\"),\nperson(given = \"Alok\", family = \"Kumar\", email = \"alok4039@gmail.com\", role = \"aut\"),\nperson(given = \"Ashish\", family = \"Anand\", email = \"anand.ashish@iitg.ac.in\", role = \"aut\",\ncomment = c(ORCID = \"0000-0002-0024-3358\")))", "License": "CC BY-NC-SA 4.0", "Encoding": "UTF-8", "RoxygenNote": "7.1.0", "biocViews": "NetworkInference, GraphAndNetwork, Network, GeneExpression,\nMicroarray, SystemsBiology, Software", "URL": "https://www.biorxiv.org/content/early/2018/06/14/272484,\nhttps://github.com/sap01/TGS", "BugReports": "https://github.com/sap01/TGS/issues", "VignetteBuilder": "knitr", "Config/pak/sysreqs": "libglpk-dev libxml2-dev", "Repository": "https://sap01.r-universe.dev", "Date/Publication": "2020-05-22 14:04:41 UTC", "RemoteUrl": "https://github.com/sap01/tgs", "RemoteRef": "HEAD", "RemoteSha": "c639074ec5d4e734ad00bbec1d713e60ae75b181", "NeedsCompilation": "no", "Packaged": { "Date": "2026-06-07 09:19:09 UTC", "User": "root" }, "Author": "Saptarshi Pyne [aut, cre] (ORCID:\n),\nManan Gupta [aut],\nAlok Kumar [aut],\nAshish Anand [aut] (ORCID: )", "Maintainer": "Saptarshi Pyne ", "MD5sum": "87cb332f793a99cf7510d8bb302fb0e2", "_user": "sap01", "_type": "src", "_file": "TGS_1.0.1.9000.tar.gz", "_fileid": "5ddeefc95b7e6f9ed8c25c575193a76ea4c252404fa5287cdd5299a7cd6195c6", "_filesize": 207609, "_sha256": "5ddeefc95b7e6f9ed8c25c575193a76ea4c252404fa5287cdd5299a7cd6195c6", "_created": "2026-06-07T09:19:09.000Z", "_published": "2026-06-08T06:21:03.621Z", "_distro": "noble", "_jobs": [ { "job": 80033763238, "time": 125, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "7462764488" }, { "job": 80033763332, "time": 131, "config": "linux-release-x86_64", "r": "4.6.0", "check": "NOTE", "artifact": "7462765473" }, { "job": 80033763061, "time": 47, "config": "macos-oldrel-arm64", "r": "", "check": "FAIL", "artifact": "" }, { "job": 80033763333, "time": 119, "config": "macos-release-arm64", "r": "4.6.0", "check": "NOTE", "artifact": "7462761552" }, { "job": 80033763107, "time": 200, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7462747820" }, { "job": 80033763537, "time": 117, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7462763562" }, { "job": 80033763547, "time": 78, "config": "windows-devel", "r": "4.7.0", "check": "NOTE", "artifact": "7462758466" }, { "job": 80033763541, "time": 76, "config": "windows-oldrel", "r": "4.5.3", "check": "NOTE", "artifact": "7462758094" }, { "job": 80033763421, "time": 71, "config": "windows-release", "r": "4.6.0", "check": "NOTE", "artifact": "7462757319" } ], "_buildurl": "https://github.com/r-universe/sap01/actions/runs/27088382385", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/sap01/tgs", "_commit": { "id": "c639074ec5d4e734ad00bbec1d713e60ae75b181", "author": "sap01 ", "committer": "sap01 ", "message": "Re-format code lines\n", "time": 1590156281 }, "_maintainer": { "name": "Saptarshi Pyne", "email": "saptarshipyne01@gmail.com", "login": "sap01", "twitter": "@saptarshipyne01", "description": "Assistant Prof., Computational and Data Sciences, IISER Kolkata, India. 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