Package: TGS 1.0.1.9000

TGS: Rapid Reconstruction of Time-Varying Gene Regulatory Networks

Rapid advancements in high-throughput gene sequencing technologies have resulted in genome-scale time-series datasets. Uncovering the underlying temporal sequence of gene regulatory events in the form of time-varying gene regulatory networks demands accurate and computationally efficient algorithms. Such an algorithm is 'TGS'. It is proposed in Saptarshi Pyne, Alok Ranjan Kumar, and Ashish Anand; Rapid reconstruction of time-varying gene regulatory networks; IEEE/ACM Transactions on Computational Biology and Bioinformatics, 17(1):278{291, Jan-Feb 2020. The TGS algorithm is shown to consume only 29 minutes for a microarray dataset with 4028 genes. This package provides an implementation of the TGS algorithm and its variants.

Authors:Saptarshi Pyne [aut, cre], Manan Gupta [aut], Alok Kumar [aut], Ashish Anand [aut]